3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01204

Details:

PFam ID : PF01204

PFam Domain Description : Trehalase

Number of Sequence in 50% Dataset : 177

Number of Sequence in Full Dataset : 578

Average sequence length: 365.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01204	D7VZI8_9FLAO_1_106	94.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01204	C1E6R9_MICSR_26_598	99.3

Sequence based PCA Plot of the family - PF01204 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=106 Length=8
Motif3 Start=94 Length=8
Motif4 Start=19 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay