3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01203

Details:

PFam ID : PF01203

PFam Domain Description : Type II secretion system (T2SS), protein N

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 151

Average sequence length: 209.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01203	B5JVC4_9GAMM_34_255	98.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01203	E5FR53_9GAMM_32_255	100

Sequence based PCA Plot of the family - PF01203 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=11
Motif2 Start=13 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay