3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01189

Details:

PFam ID : PF01189

PFam Domain Description : NOL1/NOP2/sun family

Number of Sequence in 50% Dataset : 413

Number of Sequence in Full Dataset : 2921

Average sequence length: 233.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01189	B6YY32_9RHOB_202_247	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01189	D5YEQ9_MYCTU_182_254	99.9

Sequence based PCA Plot of the family - PF01189 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=38 Length=8
Motif3 Start=1 Length=8
Motif4 Start=24 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay