3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01188

Details:

PFam ID : PF01188

PFam Domain Description : Mandelate racemase / muconate lactonizing enzyme, C-terminal domain

Number of Sequence in 50% Dataset : 188

Number of Sequence in Full Dataset : 1917

Average sequence length: 69.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01188	B6YY32_9RHOB_202_247	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01188	A6CG70_9PLAN_204_275	100

Sequence based PCA Plot of the family - PF01188 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=28
Motif2 Start=45 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay