3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01187

Details:

PFam ID : PF01187

PFam Domain Description : Macrophage migration inhibitory factor (MIF)

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 307

Average sequence length: 109.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01187	E3GIW6_EUBLK_4_112	51.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01187	B8PND6_POSPM_2_124	100

Sequence based PCA Plot of the family - PF01187 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=88 Length=8
Motif3 Start=31 Length=8
Motif4 Start=115 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay