3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01186

Details:

PFam ID : PF01186

PFam Domain Description : Lysyl oxidase

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 95

Average sequence length: 164.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01186	E7F3I1_DANRE_1_76	56.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01186	C4Q0L8_SCHMA_291_340	100

Sequence based PCA Plot of the family - PF01186 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=98 Length=8
Motif4 Start=124 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay