3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01185

Details:

PFam ID : PF01185

PFam Domain Description : Fungal hydrophobin

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 230

Average sequence length: 79.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01185	B6HJ65_PENCW_41_137	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01185	Q4WEK0_ASPFU_54_135	95.6

Sequence based PCA Plot of the family - PF01185 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=3 Length=17
Motif3 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay