3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01184

Details:

PFam ID : PF01184

PFam Domain Description : GPR1/FUN34/yaaH family

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 516

Average sequence length: 192.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01184	D8PEH7_9BACT_2_189	73.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01184	Q4CKX8_TRYCR_38_141	100

Sequence based PCA Plot of the family - PF01184 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=26 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay