3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01183

Details:

PFam ID : PF01183

PFam Domain Description : Glycosyl hydrolases family 25

Number of Sequence in 50% Dataset : 294

Number of Sequence in Full Dataset : 1085

Average sequence length: 175.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01183	C0WMQ1_LACBU_126_193	98.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01183	C3I3R4_BACTU_1_72	100

Sequence based PCA Plot of the family - PF01183 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=51 Length=8
Motif2 Start=13 Length=8
Motif3 Start=69 Length=8
Motif4 Start=92 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay