3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01182

Details:

PFam ID : PF01182

PFam Domain Description : Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase

Number of Sequence in 50% Dataset : 214

Number of Sequence in Full Dataset : 1767

Average sequence length: 194.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01182	A8JES5_CHLRE_124_192	87.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01182	Q2LRC0_SYNAS_14_95	100

Sequence based PCA Plot of the family - PF01182 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=241 Length=8
Motif2 Start=57 Length=8
Motif3 Start=26 Length=8
Motif4 Start=218 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay