3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01180

Details:

PFam ID : PF01180

PFam Domain Description : Dihydroorotate dehydrogenase

Number of Sequence in 50% Dataset : 159

Number of Sequence in Full Dataset : 1848

Average sequence length: 277.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01180	B6W8L3_9FIRM_1_60	75.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01180	D3LLV2_MICLU_67_152	100

Sequence based PCA Plot of the family - PF01180 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=34 Length=17
Motif2 Start=1 Length=8
Motif3 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay