3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01179

Details:

PFam ID : PF01179

PFam Domain Description : Copper amine oxidase, enzyme domain

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 450

Average sequence length: 343.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01179	D8PAV4_9BACT_22_102	74.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01179	C9DF11_9BACT_1_82	99.7

Sequence based PCA Plot of the family - PF01179 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=18
Motif3 Start=37 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay