3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01177

Details:

PFam ID : PF01177

PFam Domain Description : Asp/Glu/Hydantoin racemase

Number of Sequence in 50% Dataset : 446

Number of Sequence in Full Dataset : 2736

Average sequence length: 210.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01177	C2SQV5_BACCE_1_133	68.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01177	D7CE97_STRBB_2_105	98.8

Sequence based PCA Plot of the family - PF01177 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=85 Length=8
Motif4 Start=64 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay