3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01176

Details:

PFam ID : PF01176

PFam Domain Description : Translation initiation factor 1A / IF-1

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 804

Average sequence length: 65.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01176	D3B5Z9_POLPA_20_85	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01176	Q74MM1_NANEQ_21_90	99.1

Sequence based PCA Plot of the family - PF01176 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=27 Length=8
Motif3 Start=3 Length=8
Motif4 Start=43 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay