3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01175

Details:

PFam ID : PF01175

PFam Domain Description : Urocanase

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 400

Average sequence length: 517.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01175	B7Q456_IXOSC_201_297	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01175	E3CWQ9_9BACT_10_556	100

Sequence based PCA Plot of the family - PF01175 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=66 Length=8
Motif2 Start=35 Length=8
Motif3 Start=88 Length=11
Motif4 Start=2 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay