3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01169

Details:

PFam ID : PF01169

PFam Domain Description : Uncharacterized protein family UPF0016

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 969

Average sequence length: 75.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01169	D6STM2_9DELT_4_80	65.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01169	D6STM2_9DELT_4_80	99.6

Sequence based PCA Plot of the family - PF01169 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=33 Length=8
Motif3 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay