3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01168

Details:

PFam ID : PF01168

PFam Domain Description : Alanine racemase, N-terminal domain

Number of Sequence in 50% Dataset : 653

Number of Sequence in Full Dataset : 3834

Average sequence length: 218.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01168	A0CJ98_PARTE_293_402	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01168	D3FA20_CONWI_171_319	99.8

Sequence based PCA Plot of the family - PF01168 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=44 Length=20
Motif3 Start=111 Length=14
Motif4 Start=21 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay