3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01167

Details:

PFam ID : PF01167

PFam Domain Description : Tub family

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 318

Average sequence length: 211.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01167	A0CJ98_PARTE_293_402	73.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01167	A4S530_OSTLU_25_183	99.6

Sequence based PCA Plot of the family - PF01167 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=33 Length=8
Motif4 Start=182 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay