3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01160

Details:

PFam ID : PF01160

PFam Domain Description : Vertebrate endogenous opioids neuropeptide

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 59

Average sequence length: 45.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01160	D2I5W3_AILME_1_28	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01160	Q5EAP7_DANRE_39_87	94.8

Sequence based PCA Plot of the family - PF01160 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=13 Length=8
Motif2 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay