3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01156

Details:

PFam ID : PF01156

PFam Domain Description : Inosine-uridine preferring nucleoside hydrolase

Number of Sequence in 50% Dataset : 433

Number of Sequence in Full Dataset : 1459

Average sequence length: 298.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01156	D8F1D8_9DELT_29_431	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01156	A5IA20_LEGPC_1_247	100

Sequence based PCA Plot of the family - PF01156 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=3 Length=17
Motif3 Start=116 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay