3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01155

Details:

PFam ID : PF01155

PFam Domain Description : Hydrogenase expression/synthesis hypA family

Number of Sequence in 50% Dataset : 147

Number of Sequence in Full Dataset : 558

Average sequence length: 112.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01155	A1RXS0_THEPD_1_145	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01155	A1RXS0_THEPD_1_145	100

Sequence based PCA Plot of the family - PF01155 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=134 Length=11
Motif3 Start=121 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay