3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01154

Details:

PFam ID : PF01154

PFam Domain Description : Hydroxymethylglutaryl-coenzyme A synthase N terminal

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 378

Average sequence length: 162.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01154	E9HU47_DAPPU_57_123	24

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01154	D6YWG1_WADCW_3_188	100

Sequence based PCA Plot of the family - PF01154 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=154 Length=8
Motif2 Start=2 Length=8
Motif3 Start=171 Length=11
Motif4 Start=128 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay