3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01153

Details:

PFam ID : PF01153

PFam Domain Description : Glypican

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 172

Average sequence length: 323.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01153	F1L364_ASCSU_17_547	85.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01153	A7SVQ0_NEMVE_1_206	98.8

Sequence based PCA Plot of the family - PF01153 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=76 Length=8
Motif2 Start=2 Length=8
Motif3 Start=18 Length=8
Motif4 Start=100 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay