3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01152

Details:

PFam ID : PF01152

PFam Domain Description : Bacterial-like globin

Number of Sequence in 50% Dataset : 147

Number of Sequence in Full Dataset : 851

Average sequence length: 116.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01152	A0DEL4_PARTE_42_103	71.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01152	B6BTF9_9PROT_33_161	100

Sequence based PCA Plot of the family - PF01152 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=15 Length=8
Motif3 Start=53 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay