3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01151

Details:

PFam ID : PF01151

PFam Domain Description : GNS1/SUR4 family

Number of Sequence in 50% Dataset : 206

Number of Sequence in Full Dataset : 878

Average sequence length: 221.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01151	C3ZRH9_BRAFL_199_272	80.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01151	E8NHR2_LEIME_26_359	100

Sequence based PCA Plot of the family - PF01151 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=100 Length=8
Motif2 Start=218 Length=8
Motif3 Start=154 Length=8
Motif4 Start=118 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay