3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01150

Details:

PFam ID : PF01150

PFam Domain Description : GDA1/CD39 (nucleoside phosphatase) family

Number of Sequence in 50% Dataset : 225

Number of Sequence in Full Dataset : 572

Average sequence length: 341.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01150	C6H971_AJECH_7_178	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01150	B9IPL5_POPTR_1_109	99.8

Sequence based PCA Plot of the family - PF01150 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=124 Length=8
Motif2 Start=3 Length=18
Motif3 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay