3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01149

Details:

PFam ID : PF01149

PFam Domain Description : Formamidopyrimidine-DNA glycosylase N-terminal domain

Number of Sequence in 50% Dataset : 185

Number of Sequence in Full Dataset : 1410

Average sequence length: 120.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01149	Q83HW2_TROW8_2_139	96.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01149	E3IRK1_DESVR_2_211	100

Sequence based PCA Plot of the family - PF01149 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=77 Length=8
Motif2 Start=62 Length=8
Motif3 Start=45 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay