3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01148

Details:

PFam ID : PF01148

PFam Domain Description : Cytidylyltransferase family

Number of Sequence in 50% Dataset : 612

Number of Sequence in Full Dataset : 2059

Average sequence length: 248.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01148	B6A821_9ENTR_1_140	95.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01148	D7G8G9_ECTSI_14_281	99.7

Sequence based PCA Plot of the family - PF01148 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=57 Length=8
Motif3 Start=160 Length=8
Motif4 Start=146 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay