3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01147

Details:

PFam ID : PF01147

PFam Domain Description : Crustacean CHH/MIH/GIH neurohormone family

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 112

Average sequence length: 69.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01147	E3LEF3_CAERE_176_235	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01147	B7QGS6_IXOSC_37_109	100

Sequence based PCA Plot of the family - PF01147 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=39 Length=14
Motif3 Start=23 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay