3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01146

Details:

PFam ID : PF01146

PFam Domain Description : Caveolin

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 78

Average sequence length: 143.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01146	D3UA31_HYDEL_2_50	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01146	A8XL72_CAEBR_70_230	100

Sequence based PCA Plot of the family - PF01146 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=39 Length=8
Motif4 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay