3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01144

Details:

PFam ID : PF01144

PFam Domain Description : Coenzyme A transferase

Number of Sequence in 50% Dataset : 133

Number of Sequence in Full Dataset : 1894

Average sequence length: 204.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01144	Q9YAX6_AERPE_5_349	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01144	C7Y693_9LACO_1_80	59

Sequence based PCA Plot of the family - PF01144 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=177 Length=17
Motif2 Start=11 Length=21
Motif3 Start=240 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay