3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01142

Details:

PFam ID : PF01142

PFam Domain Description : tRNA pseudouridine synthase D (TruD)

Number of Sequence in 50% Dataset : 288

Number of Sequence in Full Dataset : 749

Average sequence length: 321.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01142	Q9YAX6_AERPE_5_349	80.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01142	A4HKY3_LEIBR_826_934	100

Sequence based PCA Plot of the family - PF01142 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=101 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay