3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01141

Details:

PFam ID : PF01141

PFam Domain Description : Gag polyprotein, inner coat protein p12

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 16

Average sequence length: 74.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01141	Q83373_9GAMR_2_72	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01141	B9VGS6_9GAMR_130_180	100

Sequence based PCA Plot of the family - PF01141 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay