3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01140

Details:

PFam ID : PF01140

PFam Domain Description : Matrix protein (MA), p15

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 42

Average sequence length: 121.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01140	Q83373_9GAMR_2_72	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01140	GAG_AVISN_2_137	100

Sequence based PCA Plot of the family - PF01140 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=126 Length=8
Motif3 Start=94 Length=8
Motif4 Start=76 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay