3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01139

Details:

PFam ID : PF01139

PFam Domain Description : Uncharacterized protein family UPF0027

Number of Sequence in 50% Dataset : 120

Number of Sequence in Full Dataset : 803

Average sequence length: 352.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01139	D3ARE2_9CLOT_100_571	73.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01139	D3ARE2_9CLOT_100_571	100

Sequence based PCA Plot of the family - PF01139 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=464 Length=8
Motif2 Start=381 Length=8
Motif3 Start=436 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay