3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01138

Details:

PFam ID : PF01138

PFam Domain Description : 3' exoribonuclease family, domain 1

Number of Sequence in 50% Dataset : 253

Number of Sequence in Full Dataset : 2959

Average sequence length: 132.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01138	EXOS7_DICDI_29_211	88.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01138	C6HDS7_AJECH_44_106	96.1

Sequence based PCA Plot of the family - PF01138 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=17 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay