3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01134

Details:

PFam ID : PF01134

PFam Domain Description : Glucose inhibited division protein A

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 1584

Average sequence length: 344.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01134	A2BVI2_PROM5_5_211	62.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01134	Q703W5_THETE_268_333	98.6

Sequence based PCA Plot of the family - PF01134 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=136 Length=8
Motif2 Start=98 Length=8
Motif3 Start=3 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay