3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01133

Details:

PFam ID : PF01133

PFam Domain Description : Enhancer of rudimentary

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 75

Average sequence length: 96.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01133	A5BQS2_VITVI_45_97	61.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01133	C5LA87_9ALVE_70_199	100

Sequence based PCA Plot of the family - PF01133 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=1 Length=8
Motif3 Start=18 Length=8
Motif4 Start=108 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay