3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01132

Details:

PFam ID : PF01132

PFam Domain Description : Elongation factor P (EF-P) OB domain

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 1162

Average sequence length: 54.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01132	C1FF06_MICSR_68_123	5.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01132	C1FF06_MICSR_68_123	100

Sequence based PCA Plot of the family - PF01132 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=48 Length=8
Motif2 Start=39 Length=8
Motif3 Start=4 Length=8
Motif4 Start=16 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay