3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01131

Details:

PFam ID : PF01131

PFam Domain Description : DNA topoisomerase

Number of Sequence in 50% Dataset : 396

Number of Sequence in Full Dataset : 2768

Average sequence length: 375.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01131	Q0E185_ORYSJ_1_113	73.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01131	C5B4I9_METEA_217_355	100

Sequence based PCA Plot of the family - PF01131 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=156 Length=23
Motif2 Start=1 Length=11
Motif3 Start=42 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay