3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01130

Details:

PFam ID : PF01130

PFam Domain Description : CD36 family

Number of Sequence in 50% Dataset : 249

Number of Sequence in Full Dataset : 453

Average sequence length: 346.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01130	F1RFN5_PIG_2_63	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01130	E9CBI9_9EUKA_2203_2350	100

Sequence based PCA Plot of the family - PF01130 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=192 Length=8
Motif3 Start=143 Length=8
Motif4 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay