3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01129

Details:

PFam ID : PF01129

PFam Domain Description : NAD:arginine ADP-ribosyltransferase

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 146

Average sequence length: 187.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01129	B3G4N9_9BILA_10_165	56.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01129	Q5GQD0_BPSYP_24_234	99.3

Sequence based PCA Plot of the family - PF01129 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=161 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay