3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01128

Details:

PFam ID : PF01128

PFam Domain Description : Uncharacterized protein family UPF0007

Number of Sequence in 50% Dataset : 277

Number of Sequence in Full Dataset : 1371

Average sequence length: 216.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01128	ISPD_CORJK_5_272	93.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01128	ISPD_CORJK_5_272	100

Sequence based PCA Plot of the family - PF01128 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=14
Motif2 Start=243 Length=20
Motif3 Start=177 Length=17
Motif4 Start=112 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay