3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01126

Details:

PFam ID : PF01126

PFam Domain Description : Heme oxygenase

Number of Sequence in 50% Dataset : 148

Number of Sequence in Full Dataset : 493

Average sequence length: 184.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01126	D2QE94_SPILD_2_87	87.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01126	D2QE94_SPILD_2_87	99.5

Sequence based PCA Plot of the family - PF01126 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=77 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay