3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01125

Details:

PFam ID : PF01125

PFam Domain Description : G10 protein

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 120

Average sequence length: 137.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01125	F2HHQ3_9CRYP_13_137	64.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01125	B4GXJ5_DROPE_6_63	100

Sequence based PCA Plot of the family - PF01125 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=60 Length=8
Motif2 Start=96 Length=11
Motif3 Start=14 Length=8
Motif4 Start=121 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay