3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01124

Details:

PFam ID : PF01124

PFam Domain Description : MAPEG family

Number of Sequence in 50% Dataset : 251

Number of Sequence in Full Dataset : 1051

Average sequence length: 124.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01124	C9SPP0_VERA1_5_91	82.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01124	B0C504_ACAM1_1_150	99.7

Sequence based PCA Plot of the family - PF01124 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=8 Length=27
Motif2 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay