3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01122

Details:

PFam ID : PF01122

PFam Domain Description : Eukaryotic cobalamin-binding protein

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 49

Average sequence length: 263.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01122	B4DVY6_HUMAN_6_126	11.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01122	E1B723_BOVIN_6_322	100

Sequence based PCA Plot of the family - PF01122 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=169 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay