3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01121

Details:

PFam ID : PF01121

PFam Domain Description : Dephospho-CoA kinase

Number of Sequence in 50% Dataset : 298

Number of Sequence in Full Dataset : 1592

Average sequence length: 174.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01121	B8C064_THAPS_1_228	84.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01121	D1KBC4_9GAMM_2_58	100

Sequence based PCA Plot of the family - PF01121 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=42 Length=14
Motif2 Start=111 Length=8
Motif3 Start=154 Length=8
Motif4 Start=1 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay