3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01120

Details:

PFam ID : PF01120

PFam Domain Description : Alpha-L-fucosidase

Number of Sequence in 50% Dataset : 174

Number of Sequence in Full Dataset : 820

Average sequence length: 320.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01120	D7VG90_9SPHI_1_65	91.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01120	Q027I9_SOLUE_22_284	100

Sequence based PCA Plot of the family - PF01120 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=10 Length=17
Motif3 Start=107 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay