3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01119

Details:

PFam ID : PF01119

PFam Domain Description : DNA mismatch repair protein, C-terminal domain

Number of Sequence in 50% Dataset : 222

Number of Sequence in Full Dataset : 1310

Average sequence length: 117.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01119	D8M4L0_BLAHO_1_70	98.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01119	C4Q7S5_SCHMA_225_404	100

Sequence based PCA Plot of the family - PF01119 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=34 Length=17
Motif3 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay